Since MOSS is so big now days and there is so much to learn I've spent a lot of time reading blogs to get a understanding of problems other people have ran into and what solutions they created to solve these problems.  I'm keeping this list so I don't have to search for them again in 6 months when I start another project that has the same scenario's as my past projects. 

Visio and SharePoint:

•  http://grumpywookie.wordpress.com/2008/02/27/sharepoint-visio-mossig/

MySite:

• You do not see a link to the home page of the portal site in a personal site that you created in SharePoint Server 2007 - http://support.microsoft.com/kb/924464
• Customizing MOSS 2007 My Sites within the enterprise - http://blogs.msdn.com/sharepoint/archive/2007/03/22/customizing-moss-2007-my-sites-within-the-enterprise.aspx

Branding:

Corporate Intranet Branding

• http://blogs.msdn.com/bgeoffro/archive/2007/11/12/branding-a-moss-corporate-intranet-portal-part-1a-high-level-overview-terminology-and-approach.aspx
• http://blogs.msdn.com/bgeoffro/archive/2007/11/12/branding-a-moss-corporate-intranet-portal-part-1b-branding-methods-by-scope-and-scenario.aspx
• http://blogs.msdn.com/bgeoffro/archive/2007/11/12/branding-a-moss-corporate-intranet-portal-part-2-site-system-pages.aspx
• http://blogs.msdn.com/bgeoffro/archive/2007/11/12/branding-a-moss-corporate-intranet-portal-part-3-layouts-pages.aspx

CSS stuff

• http://www.sharepointblogs.com/michael/archive/2007/07/16/sharepoint-s-core-css-stylesheet-put-it-to-where-it-belongs.aspx
• http://www.cleverworkarounds.com/2007/10/08/sharepoint-branding-how-css-works-with-master-pages-part-1/
• http://www.cleverworkarounds.com/2007/10/11/sharepoint-branding-how-css-works-with-master-pages-part-2/
• http://www.cleverworkarounds.com/2007/10/13/sharepoint-branding-%e2%80%93-how-css-works-with-master-pages-%e2%80%93-part-3/
• http://msdn.microsoft.com/en-us/library/ms438349.aspx
• http://www.heathersolomon.com/content/sp07cssreference.htm

Application.master

• http://stephenkaye.blogspot.com/2008/03/how-to-customise-applicationmaster-file.html (Chris Regan sent this one to me)